########################################
# Program: needle
# Rundate: Sat May 20 13:02:40 2006
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/needle-20060520-13023439248727.output
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: c5204877-5203272
# 2: 28380636:70545-70686,
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1606
# Identity: 626/1606 (39.0%)
# Similarity: 626/1606 (39.0%)
# Gaps: 980/1606 (61.0%)
# Score: 3277.0
#
#
#=======================================
c5204877-5203 1 ACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGACACC 50
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 1 ACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGACACC 50
c5204877-5203 51 ATGGTGCATCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGG 100
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 51 ATGGTGCATCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGG 100
c5204877-5203 101 CAAGGTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAGGTTGGTAT 150
||||||||||||||||||||||||||||||||||||||||
28380636:7054 101 CAAGGTGAACGTGGATGAAGTTGGTGGTGAGGCCCTGGGC---------- 140
c5204877-5203 151 CAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAAACTGGGCATGTGGA 200
28380636:7054 141 -------------------------------------------------- 140
c5204877-5203 201 GACAGAGAAGACTCTTGGGTTTCTGATAGGCACTGACTCTCTCTGCCTAT 250
28380636:7054 141 -------------------------------------------------- 140
c5204877-5203 251 TGGTCTATTTTCCCACCCTTAGGCTGCTGGTGGTCTACCCTTGGACCCAG 300
||||||||||||||||||||||||||||||
28380636:7054 141 --------------------AGGCTGCTGGTGGTCTACCCTTGGACCCAG 170
c5204877-5203 301 AGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGG 350
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 171 AGGTTCTTTGAGTCCTTTGGGGATCTGTCCACTCCTGATGCTGTTATGGG 220
c5204877-5203 351 CAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTG 400
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 221 CAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGTGCCTTTAGTG 270
c5204877-5203 401 ATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGT 450
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 271 ATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGT 320
c5204877-5203 451 GAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGGTGAG 500
||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 321 GAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAACTTCAG------ 364
c5204877-5203 501 TCTATGGGACGCTTGATGTTTTCTTTCCCCTTCTTTTCTATGGTTAAGTT 550
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 551 CATGTCATAGGAAGGGGATAAGTAACAGGGTACAGTTTAGAATGGGAAAC 600
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 601 AGACGAATGATTGCATCAGTGTGGAAGTCTCAGGATCGTTTTAGTTTCTT 650
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 651 TTATTTGCTGTTCATAACAATTGTTTTCTTTTGTTTAATTCTTGCTTTCT 700
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 701 TTTTTTTTCTTCTCCGCAATTTTTACTATTATACTTAATGCCTTAACATT 750
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 751 GTGTATAACAAAAGGAAATATCTCTGAGATACATTAAGTAACTTAAAAAA 800
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 801 AAACTTTACACAGTCTGCCTAGTACATTACTATTTGGAATATATGTGTGC 850
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 851 TTATTTGCATATTCATAATCTCCCTACTTTATTTTCTTTTATTTTTAATT 900
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 901 GATACATAATCATTATACATATTTATGGGTTAAAGTGTAATGTTTTAATA 950
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 951 TGTGTACACATATTGACCAAATCAGGGTAATTTTGCATTTGTAATTTTAA 1000
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 1001 AAAATGCTTTCTTCTTTTAATATACTTTTTTGTTTATCTTATTTCTAATA 1050
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 1051 CTTTCCCTAATCTCTTTCTTTCAGGGCAATAATGATACAATGTATCATGC 1100
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 1101 CTCTTTGCACCATTCTAAAGAATAACAGTGATAATTTCTGGGTTAAGGCA 1150
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 1151 ATAGCAATATCTCTGCATATAAATATTTCTGCATATAAATTGTAACTGAT 1200
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 1201 GTAAGAGGTTTCATATTGCTAATAGCAGCTACAATCCAGCTACCATTCTG 1250
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 1251 CTTTTATTTTATGGTTGGGATAAGGCTGGATTATTCTGAGTCCAAGCTAG 1300
28380636:7054 365 -------------------------------------------------- 364
c5204877-5203 1301 GCCCTTTTGCTAATCATGTTCATACCTCTTATCTTCCTCCCACAGCTCCT 1350
||||||
28380636:7054 365 --------------------------------------------GCTCCT 370
c5204877-5203 1351 GGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 371 GGGCAACGTGCTGGTCTGTGTGCTGGCCCATCACTTTGGCAAAGAATTCA 420
c5204877-5203 1401 CCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAAT 1450
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 421 CCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAAT 470
c5204877-5203 1451 GCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 471 GCCCTGGCCCACAAGTATCACTAAGCTCGCTTTCTTGCTGTCCAATTTCT 520
c5204877-5203 1501 ATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATT 1550
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 521 ATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATT 570
c5204877-5203 1551 ATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTT 1600
||||||||||||||||||||||||||||||||||||||||||||||||||
28380636:7054 571 ATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTT 620
c5204877-5203 1601 CATTGC 1606
||||||
28380636:7054 621 CATTGC 626
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